bioformats.org, microformats for biology
bioformats.org - microformats for biology
Microformats add value to the data you explore and publish on the web. On this site you can find advice, markup and a blog to start using microformats in biology.

hAction

A working draft for a microformat to represent services and workflows

The hAction microformat allows you to add additional semantic information to web pages containing service information for use in informatic workflows. This allows visitors to use that data in a more flexible way.

Specification

This microformat aims to map the following common attributes of a service action.
  • Service destination URL
  • Fields for data collection or display. Existing form elements (such as text fields and drop down menus) can be further described using the HTML name attribute.

Schema

The hAction schema consists of the following:
  • hAction
    • destination
    • field (optional)

Example

A simple RESTful service that accepts a sequence for a PROSITE search could be represented on a web page as:
TrEMBL ID:
or
Sequence:

With associated HTML:
<div class='haction'>
  <form method='POST' class='destination' action='http://www.bioformats.org/haction/'>
    TrEMBL ID:<br />
      <input type='text' class='field' name='TrEMBL' /> or<br />
	  Sequence:<br />
	  <textarea rows='2' cols='30' class='field' name='sequence'></textarea>
	  <br />
	  <input type='submit' value='Search' />
  </form>
</div>

Bioformats.org definitions

  • hGene for genes
  • hAction for workflows

Editor

  • Matt Wood, Wellcome Trust Sanger Institute

Authors

  • Arfon Smith, Wellcome Trust Sanger Institute

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